Sinha Lab focuses on a variety of projects, all of which relate directly or indirectly to leaf development.
Projects include:
- Genetic and molecular analysis of compound leaf development in tomato
- The regulation of leaf complexity in Solanaceae
- Evolution of leaf complexity
- Evolution and expression of homeobox genes
- Developmental Significance of RNA movement in plants
- The role of Knox genes in moss development
Lignin-based resistance to Cuscuta campestris in tomato
Min-Yao Jhu, Moran Farhi, Li Wang, Richard N Philbrook, Michael S Belcher, Hokuto Nakayama, Kristina S Zumstein, Steven D Rowland, Mily Ron, Patrick M Shih, Neelima R Sinha
bioRxiv, 706861
Innovation, conservation and repurposing of gene function in plant root cell type development
Kaisa Kajala, Lidor Shaar-Moshe, … Roger Deal, Dan J Kliebenstein, Torgeir R Hvidsten, Nicholas J Provart, Neelima R Sinha, Daniel E Runcie, Julia Bailey-Serres, Siobhan Brady
BioRxiv
Spatial transcriptional signatures define margin morphogenesis along the proximal-distal and medio-lateral axes in complex leaf species Solanum lycopersicum (tomato)
Ciera C Martinez, Siyu Li, Margaret R Woodhouse, Keiko Sugimoto, Neelima R Sinha
bioRxiv, 772228
Leaf shape is a predictor of fruit quality and cultivar performance in tomato
Steven D Rowland, Kristina Zumstein, Hokuto Nakayama, Zizhang Cheng, Amber M Flores, Daniel H Chitwood, Julin N Maloof, Neelima R Sinha
New Phytologist 226 (3), 851-865
Crop signalling: A novel crop recognition technique for robotic weed control
Rekha Raja, David C Slaughter, Steven A Fennimore, Thuy T Nguyen, Vivian L Vuong, Neelima Sinha, Laura Tourte, Richard F Smith, Mark C Siemens
biosystems engineering 187, 278-291
Decoding the gene coexpression network underlying the ability of Gevuina avellana to live in diverse light conditions
E Ostria‐Gallardo, A Ranjan, Y Ichihashi, LJ Corcuera, NR Sinha
New Phytologist 220 (1), 278-287
The molecular control of tendril development in angiosperms
MS Sousa‐Baena, LG Lohmann, J Hernandes‐Lopes, NR Sinha
New Phytologist 218 (3), 944-958
Convergent evolution and the diverse ontogenetic origins of tendrils in angiosperms
MS Sousa-Baena, NR Sinha, J Hernandes-Lopes, LG Lohmann
Frontiers in plant science 9, 403
Comparative transcriptomics with self-organizing map reveals cryptic photosynthetic differences between two accessions of North American Lake cress
Hokuto Nakayama, Tomoaki Sakamoto, Yuki Okegawa, Kaori Kaminoyama, Manabu Fujie, Yasunori Ichihashi, Tetsuya Kurata, Ken Motohashi, Ihsan Al-Shehbaz, Neelima Sinha, Seisuke Kimura
Scientific reports 8 (1), 3302
Decoding the gene coexpression network underlying the ability of Gevuina avellana to live in diverse light conditions
Y Ichihashi, NR Sinha, E Ostria-Gallardo, LJ Corcuera, A Ranjan
John Wiley & Sons
Nuclear transcriptomes at high resolution using retooled INTACT
Mauricio A Reynoso, Germain C Pauluzzi, Kaisa Kajala, Sean Cabanlit, Joel Velasco, Jérémie Bazin, Roger Deal, Neelima R Sinha, Siobhan M Brady, Julia Bailey-Serres
Plant physiology 176 (1), 270-281
Profiling of accessible chromatin regions across multiple plant species and cell types reveals common gene regulatory principles and new control modules
Kelsey A Maher, Marko Bajic, Kaisa Kajala, Mauricio Reynoso, Germain Pauluzzi, Donnelly A West, Kristina Zumstein, Margaret Woodhouse, Kerry Bubb, Michael W Dorrity, Christine Queitsch, Julia Bailey-Serres, Neelima Sinha, Siobhan M Brady, Roger B Deal
The Plant Cell 30 (1), 15-36
How do plants and phytohormones accomplish heterophylly, leaf phenotypic plasticity, in response to environmental cues
H Nakayama, NR Sinha, S Kimura
Frontiers in plant science 8, 1717
Left–right leaf asymmetry in decussate and distichous phyllotactic systems
CC Martinez, DH Chitwood, RS Smith, NR Sinha
Philosophical Transactions of the Royal Society B: Biological Sciences
Transcriptome dynamics and potential roles of Sox6 in the postnatal heart
CI An, Y Ichihashi, J Peng, NR Sinha, N Hagiwara
PloS one 11 (11), e0166574
A sister of PIN1 gene in tomato (Solanum lycopersicum) defines leaf and flower organ initiation patterns by maintaining epidermal auxin flux
CC Martinez, D Koenig, DH Chitwood, NR Sinha
Developmental biology 419 (1), 85-98
Using gene networks in EvoDevo analyses
NR Sinha, SD Rowland, Y Ichihashi
Current opinion in plant biology 33, 133-139
A new advanced backcross tomato population enables high resolution leaf QTL mapping and gene identification
Daniel Fulop, Aashish Ranjan, Itai Ofner, Michael F Covington, Daniel H Chitwood, Donelly West, Yasunori Ichihashi, Lauren Headland, Daniel Zamir, Julin N Maloof, Neelima R Sinha
G3: Genes, Genomes, Genetics 6 (10), 3169-3184
eQTL regulating transcript levels associated with diverse biological processes in tomato
Aashish Ranjan, Jessica M Budke, Steven D Rowland, Daniel H Chitwood, Ravi Kumar, Leonela Carriedo, Yasunori Ichihashi, Kristina Zumstein, Julin N Maloof, Neelima R Sinha
Plant physiology 172 (1), 328-340
In-field plant phenotyping using multi-view reconstruction: an investigation in eggplant
TT Nguyen, DC Slaughter, BT Townsley, L Carriedo, JN Maloof, N Sinha
International Conference on Precison Agriculture
Plant phenotyping using multi-view stereo vision with structured lights
TT Nguyen, DC Slaughter, JN Maloof, N Sinha
Autonomous Air and Ground Sensing Systems for Agricultural Optimization and Phenotyping
Evolutionary and environmental forces sculpting leaf development
DH Chitwood, NR Sinha
Current Biology 26 (7), R297-R306
Transcriptomic analysis suggests a key role for SQUAMOSA PROMOTER BINDING PROTEIN LIKE, NAC and YUCCA genes in the heteroblastic development of the …
Enrique Ostria‐Gallardo, Aashish Ranjan, Daniel H Chitwood, Ravi Kumar, Brad T Townsley, Yasunori Ichihashi, Luis J Corcuera, Neelima R Sinha
New Phytologist 210 (2), 694-708
A new advanced backcross tomato population enables high resolution leaf QTL mapping and gene identification
Yasunori Ichihashi, Daniel Zamir, Lauren Headland, Daniel Fulop, Daniel H Chitwood, Julin N Maloof, Itai Ofner, Neelima R Sinha, Michael F Covington, Donelly West, Aashish Ranjan
Genetics Society of America
Transcriptomic analysis suggests a key role for SQUAMOSA PROMOTER BINDING PROTEIN LIKE, NAC and YUCCA genes in the heteroblastic development of the temperate rainforest tree …
Yasunori Ichihashi, Brad T Townsley, Daniel H Chitwood, Kristina Zumstein, Ravi Kumar, Neelima R Sinha , Enrique Ostria-Gallardo, Luis J Corcuera, Aashish Ranjan
John Wiley & Sons
Comparison of structure-from-motion and stereo vision techniques for full in-field 3d reconstruction and phenotyping of plants: An investigation in sunflower
TT Nguyen, DC Slaughter, B Townsley, L Carriedo, NN Julin, N Sinha
2016 ASABE Annual International Meeting, 1
A Sister of PIN1 gene in tomato (Solanum lycopersicum) defines organ initiation patterns by maintaining epidermal auxin flux
C Martinez, D Koenig, DH Chitwood, N Sinha
BioRxiv, 042150
eQTL in a Precisely Defined Tomato Introgression Population Reveal Genetic Regulation of Gene Expression Patterns Related to Physiological and Developmental Pathways
Aashish Ranjan, Jessica M Budke, Steven D Rowland, Daniel H Chitwood, Ravi Kumar, Leonela Carriedo, Yasunori Ichihashi, Kristina Zumstein, Julin N Maloof, Neelima R Sinha
bioRxiv, 040592
Assessing variation in physicochemical, structural, and functional properties of root starches from novel Tanzanian cassava (Manihot esculenta Crantz.) landraces
M. Mtunguja, M. K., Thitisaksakul, M., Muzanila, Y. C., Wansuksri, R., Piyachomkwan, K., Laswai, H. S., Chen, G., Shoemaker, C. F., Sinha, N. and Beckles
Starch – Stärke
Domestication selected for deceleration of the circadian clock in cultivated tomato
Niels A Müller, Cris L Wijnen, Arunkumar Srinivasan, Malgorzata Ryngajllo, Itai Ofner, Tao Lin, Aashish Ranjan, Donnelly West, Julin N Maloof, Neelima R Sinha, Sanwen Huang, Dani Zamir, José M Jiménez-Gómez
Nature genetics 48 (1), 89
Genetic diversity of farmer-preferred cassava landraces in Tanzania based on morphological descriptors and single nucleotide polymorphisms
MK Mtunguja, A Ranjan, HS Laswai, Y Muzanila, J Ndunguru, NR Sinha
Plant Genetic Resources
Light-induced indeterminacy alters shade-avoiding tomato leaf morphology
Daniel H Chitwood, Ravi Kumar, Aashish Ranjan, Julie M Pelletier, Brad T Townsley, Yasunori Ichihashi, Ciera C Martinez, Kristina Zumstein, John J Harada, Julin N Maloof, Neelima R Sinha
Plant physiology 169 (3), 2030-2047
Towards Developing a Stem Cell Panel of Biomarker Genes for Epigenetic Responsiveness to Exposure to Environmental Chemicals.
C Hobbs, T Mascenik, T Maynor, N Sinha, L Recio
Environmental & Molecular Mutagenesis 56
Structured light-based 3D reconstruction system for plants
T Nguyen, D Slaughter, N Max, J Maloof, N Sinha
Sensors 15 (8), 18587-18612
BrAD-seq: Breath Adapter Directional sequencing: a streamlined, ultra-simple and fast library preparation protocol for strand specific mRNA library construction
BT Townsley, MF Covington, Y Ichihashi, K Zumstein, NR Sinha
Frontiers in plant science 6, 366
Transcriptional, posttranscriptional, and posttranslational regulation of SHOOT MERISTEMLESS gene expression in Arabidopsis determines gene function in the shoot apex
José Antonio Aguilar-Martínez, Naoyuki Uchida, Brad Townsley, Donnelly Ann West, Andrea Yanez, Nafeesa Lynn, Seisuke Kimura, Neelima Sinha
Plant physiology 167 (2), 424-442
An intracellular transcriptomic atlas of the giant coenocyte Caulerpa taxifolia
A Ranjan, BT Townsley, Y Ichihashi, NR Sinha, DH Chitwood
PLoS genetics 11 (1), e1004900
Light-induced indeterminacy alters shade avoiding tomato leaf morphology
Yasunori Ichihashi, Brad T Townsley, John J Harada, Daniel H Chitwood, Julin N Maloof, Ciera C Martinez, Kristina Zumstein, Ravi Kumar, Julie M Pelletier, Neelima R Sinha, Aashish Ranjan
American Society of Plant Biologists
Auxin signaling is a common factor underlying natural variation in tomato shade avoidance
Susan M Bush, Leonela Carriedo, Fulop Daniel, Yasunori Ichihashi, Mike F Covington, Ravi Kumar, Aashish Ranjan, Daniel H Chitwood, Lauren Headland, Daniele L Filiault, Jose M Jimenez-Gomez, Neelima R Sinha, Julin N Maloof
bioRxiv, 031088
Regulation of the KNOX-GA gene module induces heterophyllic alteration in North American lake cress
Hokuto Nakayama, Naomi Nakayama, Sumer Seiki, Mikiko Kojima, Hitoshi Sakakibara, Neelima Sinha, Seisuke Kimura
The Plant Cell 26 (12), 4733-4748
Plant development: small RNAs and the metamorphosis of leaves
DH Chitwood, NR Sinha
Current Biology 24 (22), R1087-R1089
Focus on Weed Control: De Novo Assembly and Characterization of the Transcriptome of the Parasitic Weed Dodder Identifies Genes Associated with Plant Parasitism
Aashish Ranjan, Yasunori Ichihashi, Moran Farhi, Kristina Zumstein, Brad Townsley, Rakefet David-Schwartz, Neelima R Sinha
Plant Physiology 166 (3), 1186
De novo assembly and characterization of the transcriptome of the parasitic weed dodder identifies genes associated with plant parasitism
Aashish Ranjan, Yasunori Ichihashi, Moran Farhi, Kristina Zumstein, Brad Townsley, Rakefet David-Schwartz, Neelima R Sinha
Plant Physiology 166 (3), 1186-1199
Hairy root transformation using Agrobacterium rhizogenes as a tool for exploring cell type-specific gene expression and function using tomato as a model
Mily Ron, Kaisa Kajala, Germain Pauluzzi, Dongxue Wang, Mauricio A Reynoso, Kristina Zumstein, Jasmine Garcha, Sonja Winte, Helen Masson, Soichi Inagaki, Fernán Federici, Neelima Sinha, Roger B Deal, Julia Bailey-Serres, Siobhan M Brady
Plant physiology 166 (2), 455-469
Data from: Resolving distinct genetic regulators of tomato leaf shape within a heteroblastic and ontogenetic context
Daniel H Chitwood, Aashish Ranjan, Ravi Kumar, Yasunori Ichihashi, Kristina Zumstein, Lauren R Headland, Enrique Ostria-Gallardo, José A Aguilar-Martínez, Susan Bush, Leonela Carriedo, Daniel Fulop, Ciera C Martinez, Jie Peng, Julin N Maloof, Neelima R Sinha
Resolving distinct genetic regulators of tomato leaf shape within a heteroblastic and ontogenetic context
Daniel H Chitwood, Aashish Ranjan, Ravi Kumar, Yasunori Ichihashi, Kristina Zumstein, Lauren R Headland, Enrique Ostria-Gallardo, José A Aguilar-Martínez, Susan Bush, Leonela Carriedo, Daniel Fulop, Ciera C Martinez, Jie Peng, Julin N Maloof, Neelima R Sinha
The Plant Cell 26 (9), 3616-3629
The genome of the stress-tolerant wild tomato species Solanum pennellii
Anthony Bolger, Federico Scossa, Marie E Bolger, Christa Lanz, Florian Maumus, Takayuki Tohge, Hadi Quesneville, Saleh Alseekh, Iben Sørensen, Gabriel Lichtenstein, Eric A Fich, Mariana Conte, Heike Keller, Korbinian Schneeberger, Rainer Schwacke, Itai Ofner, Julia Vrebalov, Yimin Xu, Sonia Osorio, Saulo Alves Aflitos, Elio Schijlen, José M Jiménez-Goméz, Malgorzata Ryngajllo, Seisuke Kimura, Ravi Kumar, Daniel Koenig, Lauren R Headland, Julin N Maloof, Neelima Sinha, Roeland CHJ Van Ham, René Klein Lankhorst, Linyong Mao, Alexander Vogel, Borjana Arsova, Ralph Panstruga, Zhangjun Fei, Jocelyn KC Rose, Dani Zamir, Fernando Carrari, James J Giovannoni, Detlef Weigel, Björn Usadel, Alisdair R Fernie
Nature genetics 46 (9), 1034
Evolutionary developmental transcriptomics reveals a gene network module regulating interspecific diversity in plant leaf shape
Yasunori Ichihashi, José Antonio Aguilar-Martínez, Moran Farhi, Daniel H Chitwood, Ravi Kumar, Lee V Millon, Jie Peng, Julin N Maloof, Neelima R Sinha
Proceedings of the National Academy of Sciences 111 (25), E2616-E2621
Evolution and Development of Tendrils in Bignonieae (Lamiales, Bignoniaceae) 1
MS Sousa-Baena, NR Sinha, LG Lohmann
Annals of the Missouri Botanical Garden 99 (3), 323-348
Truncation of LEAFY COTYLEDON1 protein is required for asexual reproduction in Kalanchoë daigremontiana
HMP Garcês, D Koenig, BT Townsley, M Kim, NR Sinha
Plant physiology 165 (1), 196-206
From genome to phenome and back in tomato
Y Ichihashi, NR Sinha
Current opinion in plant biology 18, 9-15
Acquisition and diversification of tendrilled leaves in B ignonieae (B ignoniaceae) involved changes in expression patterns of SHOOTMERISTEMLESS (STM), LEAFY/FLORICAULA (LFY …
MS Sousa‐Baena, LG Lohmann, M Rossi, NR Sinha
New Phytologist 201 (3), 993-1008
FOCUS ON ROOTS
Mily Ron, Kaisa Kajala, Germain Pauluzzi, Dongxue Wang, Mauricio A Reynoso, Kristina Zumstein, Jasmine Garcha, Sonja Winte, Helen Masson, Soichi Inagaki, Fernán Federici, Neelima Sinha, Roger B Deal, Julia Bailey-Serres, Siobhan M Brady, Larry M York, Abhiram Das, Eric Nord, Joshua S Weitz, Jonathan P Lynch, Neutron Radiography, Numerical Modeling Mohsen Zarebanadkouki, Eva Kroener, Anders Kaestner, Andrea Carminati, Root Nutrient Foraging Ricardo FH Giehl, Nicolaus von Wirén, Wolfgang Busch
Transcriptional, post-transcriptional and post-translational regulation of STM gene expression in Arabidopsis determines gene function in the shoot apex
José Antonio Aguilar-Martínez, Naoyuki Uchida, Brad Townsley, Donnelly Ann West, Andrea Yanez, Nafeesa Lynn, Seisuke Kimura, Neelima Sinha
A modern ampelography: a genetic basis for leaf shape and venation patterning in grape
Daniel H Chitwood, Aashish Ranjan, Ciera C Martinez, Lauren R Headland, Thinh Thiem, Ravi Kumar, Michael F Covington, Tommy Hatcher, Daniel T Naylor, Sharon Zimmerman, Nora Downs, Nataly Raymundo, Edward S Buckler, Julin N Maloof, Mallikarjuna Aradhya, Bernard Prins, Lin Li, Sean Myles, Neelima R Sinha
Plant Physiology 164 (1), 259-272
Analysis of the role of Arabidopsis class I TCP genes AtTCP7, AtTCP8, AtTCP22, and AtTCP23 in leaf development
JA Aguilar Martinez, NR Sinha
Frontiers in plant science 4, 406
Comparative transcriptomics reveals patterns of selection in domesticated and wild tomato
Daniel Koenig, José M Jiménez-Gómez, Seisuke Kimura, Daniel Fulop, Daniel H Chitwood, Lauren R Headland, Ravi Kumar, Michael F Covington, Upendra Kumar Devisetty, An V Tat, Takayuki Tohge, Anthony Bolger, Korbinian Schneeberger, Stephan Ossowski, Christa Lanz, Guangyan Xiong, Mallorie Taylor-Teeples, Siobhan M Brady, Markus Pauly, Detlef Weigel, Björn Usadel, Alisdair R Fernie, Jie Peng, Neelima R Sinha, Julin N Maloof
Proceedings of the National Academy of Sciences 110 (28), E2655-E2662
A quantitative genetic basis for leaf morphology in a set of precisely defined tomato introgression lines
Daniel H Chitwood, Ravi Kumar, Lauren R Headland, Aashish Ranjan, Michael F Covington, Yasunori Ichihashi, Daniel Fulop, José M Jiménez-Gómez, Jie Peng, Julin N Maloof, Neelima R Sinha
The Plant Cell 25 (7), 2465-2481
Dynamic transcriptomic profiles between tomato and a wild relative reflect distinct developmental architectures
DH Chitwood, JN Maloof, NR Sinha
Plant physiology 162 (2), 537-552
KNOX1 genes regulate lignin deposition and composition in monocots and dicots
BT Townsley, NR Sinha, J Kang
Frontiers in plant science 4, 121
Fine genetic mapping of RXopJ4, a bacterial spot disease resistance locus from Solanum pennellii LA716
Molly Sharlach, Douglas Dahlbeck, Lily Liu, Joshua Chiu, José M Jiménez-Gómez, Seisuke Kimura, Daniel Koenig, Julin N Maloof, Neelima Sinha, Gerald V Minsavage, Jeffrey B Jones, Robert E Stall, Brian J Staskawicz
Theoretical and applied genetics 126 (3), 601-609
Trifoliate encodes an MYB transcription factor that modulates leaf and shoot architecture in tomato
AA Naz, S Raman, CC Martinez, NR Sinha, G Schmitz, K Theres
Proceedings of the National Academy of Sciences 110 (6), 2401-2406
A census of cells in time: quantitative genetics meets developmental biology
DH Chitwood, NR Sinha
Current opinion in plant biology 16 (1), 92-99
Building a bi-directional promoter binary vector from the intergenic region of Arabidopsis thaliana cab 1 and cab 2 divergent genes useful for plant transformation
JM Tindamanyire, B Townsley, A Kiggundu, W Tushemereirwe, N Sinha
African Journal of Biotechnology 12 (11), 1203-1208
Striga parasitizes transgenic hairy roots of Zea mays and provides a tool for studying plant-plant interactions
S Runo, S Macharia, A Alakonya, J Machuka, N Sinha, J Scholes
Plant methods 8 (1), 20
A high-throughput method for Illumina RNA-Seq library preparation
Ravi Kumar, Yasunori Ichihashi, Seisuke Kimura, Daniel H Chitwood, Lauren R Headland, Jie Peng, Julin N Maloof, Neelima R Sinha
Frontiers in plant science 3, 202
Conflict between intrinsic leaf asymmetry and phyllotaxis in the resupinate leaves of Alstroemeria psittacina
Daniel H Chitwood, Daniel T Naylor, Paradee Thammapichai, Axelle C Weeger, Lauren R Headland, Neelima R Sinha
Frontiers in plant science 3, 182
The tomato genome: implications for plant breeding, genomics and evolution
A Ranjan, Y Ichihashi, NR Sinha
Genome biology 13 (8), 167
Interspecific RNA interference of SHOOT MERISTEMLESS-like disrupts Cuscuta pentagona plant parasitism
Amos Alakonya, Ravi Kumar, Daniel Koenig, Seisuke Kimura, Brad Townsley, Steven Runo, Helena M Garces, Julie Kang, Andrea Yanez, Rakefet David-Schwartz, Jesse Machuka, Neelima Sinha
The Plant Cell 24 (7), 3153-3166
A new development: evolving concepts in leaf ontogeny
BT Townsley, NR Sinha
Annual review of plant biology 63, 535-562
Leaf asymmetry as a developmental constraint imposed by auxin-dependent phyllotactic patterning
Daniel H Chitwood, Lauren R Headland, Aashish Ranjan, Ciera C Martinez, Siobhan A Braybrook, Daniel P Koenig, Cris Kuhlemeier, Richard S Smith, Neelima R Sinha
The Plant Cell 24 (6), 2318-2327
Evolutionary inferences from transcriptional analysis of wild and domesticated tomato
NR Sinha
INTEGRATIVE AND COMPARATIVE BIOLOGY 52, E161-E161
The developmental trajectory of leaflet morphology in wild tomato species
DH Chitwood, LR Headland, R Kumar, J Peng, JN Maloof, NR Sinha
Plant physiology 158 (3), 1230-1240
Native environment modulates leaf size and response to simulated foliar shade across wild tomato species
Daniel H Chitwood, Lauren R Headland, Daniele L Filiault, Ravi Kumar, José M Jiménez-Gómez, Amanda V Schrager, Daniel S Park, Jie Peng, Neelima R Sinha, Julin N Maloof
PLoS One 7 (1), e29570
Toward elucidating the mechanisms that regulate heterophylly
H Nakayama, N Nakayama, A Nakamasu, N Sinha, S Kimura
Plant Morphology 24 (1), 57-63
Keeping it simple: flowering plants tend to retain, and revert to, simple leaves
R Geeta, Liliana M Dávalos, André Levy, Lynn Bohs, Mathew Lavin, Klaus Mummenhoff, Neelima Sinha, Martin F Wojciechowski
New Phytologist 193 (2), 481-493
Plant developmental biology in the post-genomic era
NR Sinha
Frontiers in plant science 2, 11
RNA interference as a resistance mechanism against crop parasites in Africa: a ‘Trojan horse’approach
S Runo, A Alakonya, J Machuka, N Sinha
Pest management science 67 (2), 129-136
Leaflet initiation is temporally and spatially separated in simple and complex tomato (Solanum lycopersicum) leaf mutants: a developmental analysis
J Kang, NR Sinha
Botany 88 (8), 710-724
Analyses of WOX4 transgenics provide further evidence for the evolution of the WOX gene family during the regulation of diverse stem cell functions
J Ji, R Shimizu, N Sinha, MJ Scanlon
Plant signaling & behavior 5 (7), 916-920
WOX4 promotes procambial development
J Ji, J Strable, R Shimizu, D Koenig, N Sinha, MJ Scanlon
Plant physiology 152 (3), 1346-1356
The natural philosophy of plant form The natural philosophy of plant form, 1950
N Uchida, S Kimura, D Koenig, N SINHA
Journal of plant research 123 (1), 7-14
Lack of GFP Trafficking from Transgenic Nicotiana benthamiana to Parasitizing Cuscuta pentagona
AE Alakonya, SM Runo, K Dan, E Monda, J Machuka, N Sinha
Global Journal of Pharmacology 4 (3), 142-147
Evolution of leaf shape: a pattern emerges
D Koenig, N Sinha
Current topics in developmental biology 91, 169-183
Coordination of leaf development via regulation of KNOX1 genes
N Uchida, S Kimura, D Koenig, N Sinha
Journal of plant research 123 (1), 7
Transformation of the plant Kalanchoë daigremontiana using Agrobacterium tumefaciens.
H Garcês, N Sinha
Cold Spring Harbor Protocols 2009 (10), pdb. prot5303-pdb. prot5303
In situ hybridization in the plant Kalanchoë daigremontiana.
H Garcês, N Sinha
Cold Spring Harbor Protocols 2009 (10), pdb. prot5302-pdb. prot5302
Extraction of RNA from the plant Kalanchoe daigremontiana
H Garcês, N Sinha
Cold Spring Harbor Protocols 2009 (10), pdb. prot5305
Fixing and sectioning tissue from the plant Kalanchoë daigremontiana.
H Garcês, N Sinha
Cold Spring Harbor Protocols 2009 (10), pdb. prot5301-pdb. prot5301
The ‘mother of thousands’(Kalanchoe daigremontiana): a plant model for asexual reproduction and CAM studies
H Garcês, N Sinha
Cold Spring Harbor Protocols 2009 (10), pdb. emo133
LYRATE is a key regulator of leaflet initiation and lamina outgrowth in tomato
R David-Schwartz, D Koenig, NR Sinha
The Plant Cell 21 (10), 3093-3104
Auxin patterns Solanum lycopersicum leaf morphogenesis
D Koenig, E Bayer, J Kang, C Kuhlemeier, N Sinha
Development 136 (17), 2997-3006
Grafting tomato plants
S Kimura, N Sinha
Cold Spring Harbor Protocols 2008 (11), pdb. prot5083
Crossing tomato plants
S Kimura, N Sinha
Cold Spring Harbor Protocols 2008 (11), pdb. prot5082
Tomato (Solanum lycopersicum): a model fruit-bearing crop
S Kimura, N Sinha
Cold Spring Harbor Protocols 2008 (11), pdb. emo105
Long‐distance transport of mRNA via parenchyma cells and phloem across the host–parasite junction in Cuscuta
R David‐Schwartz, S Runo, B Townsley, J Machuka, N Sinha
New Phytologist 179 (4), 1133-1141
Natural variation in leaf morphology results from mutation of a novel KNOX gene
S Kimura, D Koenig, J Kang, FY Yoong, N Sinha
Current Biology 18 (9), 672-677
How to grow tomatoes.
S Kimura, N Sinha
CSH protocols 2008, pdb. prot5081-pdb. prot5081
Tomato transformation.
S Kimura, N Sinha
CSH protocols 2008, pdb. prot5084-pdb. prot5084
Compound leaf development and evolution in the legumes
Connie EM Champagne, Thomas E Goliber, Martin F Wojciechowski, Raymond W Mei, Brad T Townsley, Kan Wang, Margie M Paz, R Geeta, Neelima R Sinha
The Plant Cell 19 (11), 3369-3378
Regulation of SHOOT MERISTEMLESS genes via an upstream-conserved noncoding sequence coordinates leaf development
N Uchida, B Townsley, KH Chung, N Sinha
Proceedings of the National Academy of Sciences 104 (40), 15953-15958
Evolution of asexual reproduction in leaves of the genus Kalanchoë
Helena MP Garcês, Connie EM Champagne, Brad T Townsley, Soomin Park, Rui Malhó, Maria C Pedroso, John J Harada, Neelima R Sinha
Proceedings of the National Academy of Sciences 104 (39), 15578-15583
The Development and Evolution of Leaves
N Sinha
18th International Conference on Arabidopsis Research
Growth and development: The diversity of plant development
C Kuhlemeier, N Sinha
Current opinion in plant biology 10 (1), 1-3
Genetic Control of Leaf Shape
DP Koenig, NR Sinha
eLS
Evolution and development in plants: bridging the gap
R David-Schwartz, N Sinha
International journal of plant sciences 168 (1), 49-59
L1 division and differentiation patterns influence shoot apical meristem maintenance
S Kessler, B Townsley, N Sinha
Plant physiology 141 (4), 1349-1362
Emerging from the fog: Hypotheses and paradigms in developmental biology—The Society for Developmental Biology 2005 Annual Meeting Report
X Sun, S Barolo, D Bilder, M Montgomery, N Sinha
Developmental biology 289 (2), 273-282
The role of KNOX genes in shoot morphogenesis and compound leaf development
N Sinha
MECHANISMS OF DEVELOPMENT 122, S13-S13
Shoots and leaves, an evo-devo perspective.
NR Sinha, HM Garces, CE Champagne, KH Chung, SJ Seiki, BT Townsley
DEVELOPMENTAL BIOLOGY 283 (2), 590-590
Expression patterns of STM-like KNOX and Histone H4 genes in shoot development of the dissected-leaved basal eudicot plants Chelidonium majus and Eschscholzia californica (Papaveraceae)
EP Groot, N Sinha, S Gleissberg
Plant molecular biology 58 (3), 317-331
Compound leaves: equal to the sum of their parts?
C Champagne, N Sinha
Development 131 (18), 4401-4412
Shaping up: the genetic control of leaf shape
S Kessler, N Sinha
Current opinion in plant biology 7 (1), 65-72
Reduced leaf complexity in tomato wiry mutants suggests a role for PHAN and KNOX genes in generating compound leaves
M Kim, T Pham, A Hamidi, S McCormick, RK Kuzoff, N Sinha
Development 130 (18), 4405-4415
Erratum: The expression domain of PHANTASTICA determines leaflet placement in compound leaves
M Kim, S McCormick, M Timmermans, N Sinha
Nature 425 (6953), 102
Sequences determining RNA movement.
TT Dinh, S Gerttula, C Ubach, NR Sinha
DEVELOPMENTAL BIOLOGY 259 (2), 456-456
The expression domain of PHANTASTICA determines leaflet placement in compound leaves
M Kim, S McCormick, M Timmermans, N Sinha
Nature 424 (6947), 438
Role of Knox Genes in Shoot Development of Welwitschia mirabilis
T Pham, N Sinha
International journal of plant sciences 164 (3), 333-343
Regulating shapes and sizes
M Kim, N Sinha
Developmental cell 4 (4), 441-442
Induction of organogenesis in tomato callus using plant growth promoters including triacontanol and antioxidants.
Nadia M El-Shafey, Nada Hassan, Salah El-Din A Khodary, Abdelfattah Badr, KS Pohar, MC Gong, R Bahnson, EC Miller, SK Clinton, S Kimura, N Sinha, S Hamza, Y Chupeau, MK Sharma, AU Solanke, D Jani, Y Singh, AK Sharma, AA El-Bakry, R Devi, MS Dhaliwal, A Kaur, SS Gosal, P Bhatia, N Ashwath, T Senaratna, D Midmore, P Mamidala, RS Nanna, M Velcheva, Z Faltin, M Flaishman, Y Eshdat, A Perl, A Bhushan, RK Gupta, YF Wu, Y Chen, XM Liang, XZ Wang, N Gao, W Shen, Y Cao, Y Su, W Shi, A Yasmeen, WW Su, REA Moghaieb, H Saneoka, K Fujita, AA Mohamed, MR Ismail, MH Rahman, BG Kalyani, S Rao, T Murashige, F Skoog, N Ahsan, SH Lee, DG Lee, M Anisuzzaman, MF Alam, P Venkatachalam, N Geetha, P Priya, G Rajaseger, N Jayabalan, MG Osman, EA Elhadi, MM Khalafalla, K Ichimura, M Oda, B Dhruva, TV Ramakrishnan, CS Vaidyanathan, Z Xinrun, A Conner, FTS Nogueira, MG Costa, ML Figueira, WC Otoni, FL Finger, SM Kurtz, RD Lineberger, SH Park, JL Morris, JE Park, KD Hirschi, RH Smith, VA Plastira, AK Perdikaris, N Kauser, S Khan, SA Mohammadi, B Ghareyazie, ED Uliaie, B Darvishrohani, A Mensuali-Sodi, M Panizza, F Tognoni, DT Selvi, MA Khader, M Sundararajan
Biotechnology 16 (4-6), 9-14
The next issue of this journal Growth and development Edited by Vivian Irish and Philip Benfey
Sibum Sung, Richard M Amasino, Yulan Cheng, Xuemei Chen, Patrick S Schnable, Frank Hochholdinger, Mikio Nakazono, Sally P Ward, Ottoline Leyser, Joe Ecker, Neelima Sinha, Elizabeth A Kellogg, Bruce Veit, Liam Dolan, Dominique C Bergmann, Andrea Steimer, Ueli Grossniklaus, William Friedman, N Taike, Damien Blaudez, Frans JM Maathuis, Dale Sand
Trends in Plant Science 8, 286-293
Homologies in leaf form inferred from KNOXI gene expression during development
G Bharathan, TE Goliber, C Moore, S Kessler, T Pham, NR Sinha
Science 296 (5574), 1858-1860
Xcl1 causes delayed oblique periclinal cell divisions in developing maize leaves, leading to cellular differentiation by lineage instead of position
S Kessler, S Seiki, N Sinha
Development 129 (8), 1859-1869
The regulation of compound leaf development
G Bharathan, NR Sinha
Plant Physiology 127 (4), 1533-1538
Developmental changes due to long-distance movement of a homeobox fusion transcript in tomato
M Kim, W Canio, S Kessler, N Sinha
Science 293 (5528), 287-289
Genetic control of leaf shape
CC Martinez, NR Sinha
eLS
Regulatory Genes in Plant Development: Homeobox
KH Chung, NR Sinha
e LS
Mutations altering leaf morphology in tomato
S Kessler, M Kim, T Pham, N Weber, N Sinha
International journal of plant sciences 162 (3), 475-492
Sucrose export defective1 encodes a novel protein implicated in chloroplast-to-nucleus signaling
LM Provencher, L Miao, N Sinha, WJ Lucas
The Plant Cell 13 (5), 1127-1141
Maize Genetics 2000—And Beyond
M Running, M Scanlon, N Sinha
The Plant Cell 12 (6), 829-835
The response of epidermal cells to contact
N Sinha
Trends in plant science 5 (6), 233-234
The regulation of dorsiventral symmetry in plants
S Gleissberg, M Kim, J Jernstedt, N Sinha
The biology of biodiversity, 223-241
The Shoot Apical Meristem: Its Growth and Development
N Sinha
The Quarterly Review of Biology 74 (2), 231-231
Leaf development in angiosperms
N Sinha
Annual review of plant biology 50 (1), 419-446
Phylogenetic relationships and evolution of the KNOTTED class of plant homeodomain proteins.
G Bharathan, BJ Janssen, EA Kellogg, N Sinha
Molecular Biology and Evolution 16 (4), 553-563
Organ and cell fusions in the adherent1 mutant in maize
N Sinha
International journal of plant sciences 159 (5), 702-715
Fused organs in the adherent1 mutation in maize show altered epidermal walls with no perturbations in tissue identities
N Sinha, M Lynch
Planta 206 (2), 184-195
Overexpression of a homeobox gene, LeT6, reveals indeterminate features in the tomato compound leaf
BJ Janssen, L Lund, N Sinha
Plant Physiology 117 (3), 771-786
Isolation and characterization of two knotted-like homeobox genes from tomato
BJ Janssen, A Williams, JJ Chen, J Mathern, S Hake, N Sinha
Plant molecular biology 36 (3), 417-425
Genetic, Molecular, and Morphological Analysis of Compound Leaf Development-I-Introduction
T Goliber, S Kessler, JJ Chen, G Bharathan, N Sinha
Current Topics in Developmental Biology 1999 (43), 260-262
8 Genetic, Molecular, and Morphological Analysis of Compound Leaf Development
T Goliber, S Kessler, JJ Chen, G Bharathan, N Sinha
Current topics in developmental biology 43, 259-290
Did homeodomain proteins duplicate before the origin of angiosperms, fungi, and metazoa?
G Bharathan, BJ Janssen, EA Kellogg, N Sinha
Proceedings of the National Academy of Sciences 94 (25), 13749-13753
Simple and compound leaves: reduction or multiplication?
N Sinha
Trends in Plant Science 2 (10), 396-402
A gene fusion at a homeobox locus: alterations in leaf shape and implications for morphological evolution.
JJ Chen, BJ Janssen, A Williams, N Sinha
The Plant Cell 9 (8), 1289-1304
Identity of extra cell-layers produced in the glossy* mutation in maize
S Kessler, N Sinha
MAIZE GENETICS COOPERATION NEWSLETTER 71, 30-30
Parallelism and diversity in multiple origins of c4 photosynthesis in the grass family
NR Sinha, EA Kellogg
American Journal of Botany 83 (11), 1458-1470
The use of clonal sectors for lineage and mutant analysis
S Hake, N Sinha
The Maize Handbook, 262-270
The Knotted leaf blade is a mosaic of blade, sheath, and auricle identities
N Sinha, S Hake
Developmental Genetics 15 (5), 401-414
Overexpression of the maize homeo box gene, KNOTTED-1, causes a switch from determinate to indeterminate cell fates.
NR Sinha, RE Williams, S Hake
Genes and Development 7 (5), 787-795
CLONING, MAPPING, AND CHARACTERIZATION OF HOMEOBOX CONTAINING SEQUENCES IN TOMATO
N SINHA, S HAKE
JOURNAL OF CELLULAR BIOCHEMISTRY, 36-36
2 Genetic and Molecular Analysis of Leaf Development
N Sinha, S Hake, M Freeling
Current topics in developmental biology 28, 47-80
THE ROLE OF HOMEOBOX GENES IN MAIZE DEVELOPMENT
D Jackson, B Greene, R Kerstetter, N Sinha, L Smith, B Veit, S Hake
Molecular Biology of the Cell 3, A99-A99
Maize mutants and variants altering developmental time and their heterochronic interactions
M Freeling, R Bertrand‐Garcia, N Sinha
BioEssays 14 (4), 227-236
Perturbations in leaf development caused by the
N SINHA, S HAKE
Progress in Plant Growth Regulation: Proceedings of the 14th International …
Perturbations in leaf development caused by the dominant knotted-mutation in maize
N Sinha, S Hake
Progress in Plant Growth Regulation, 360-370
The developmental gene Knotted-1 is a member of a maize homeobox gene family
E Vollbrecht, B Veit, N Sinha, S Hake
Nature 350 (6315), 241
Mutations of Knotted Alter Cell Interactions in the Developing Maize Leaf
S Hake, N Sinha, B Veit, E Vollbrecht, R Walko
Plant Molecular Biology 2, 555-562
Genetic approaches to inflorescence and leaf development in maize
Bruce Veit, Ben Greene, Brenda Lowe, Julie Mathern, Neelima Sinha, Erik Vollbrecht, Richard Walko, Sarah Hake
Development 113 (Supplement 1), 105-111
Genetic analysis of leaf development
S Hake, N Sinha
Oxf. Surv. Plant Mol. Cell Biol. 7, 187-222
Mutant characters of Knotted maize leaves are determined in the innermost tissue layers
N Sinha, S Hake
Developmental biology 141 (1), 203-210
Developmental analysis of the Knotted-1 mutant in Zea mays
NR Sinha
University of California, Berkeley
LYRATE Is a Key Regulator of Leaflet Initiation and Lamina Outgrowth in Tomato CW OA
R David-Schwartz, D Koenig, NR Sinha
Regulatory Genes in Plant Development: Homeobox
NR Sinha
eLS
Transcriptional profile of leaf primordia of Gevuina avellana Mol.(Proteaceae) with different degrees of heteroblastic development growing under different light environments
E Ostria-Gallardo, A Ranjan, K Zumstein, R Kumar, B Townsley, D Chitwood, Y Ichihashi, LJ Corcuera, N Sinha
Minimal-genus Heegaard splittings of complements of high-distance knots.
J Hass, D Fuchs, J Schultens, A Thompson, N Sinha